czitools

Python tools for reading Carl Zeiss Image (CZI) pixel data and metadata.

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czitools is an open-source Python package for reading Carl Zeiss Image (CZI) microscopy pixel data and metadata, including well-plate structures, and converting them to OME-Zarr. It supports memory-efficient, lazy reads of gigapixel images with multiscale pyramid generation for viewers such as napari.

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